System Software
Red Hat Enterprise Linux 3 - operating system.
Torque - queuing system and scheduler.
Compilers and Parallel Computing Libraries
Portland Group Cluster Development Kit - including compilers, a debugger (pgdbg) and a profiler pgprof.
Intel Compiler Suite - including C, C++, F77 and F95 compilers.
MPICH-GM - library for MPI message-passing parallel programming over Myrinet.
MPICH - library for MPI message-passing parallel programming over ethernet.
Libraries
Intel MKL - Intel's Math Kernel Library
BLAS, LAPACK and ScaLAPACK
ARPACK
FFTW
SPRNG
SuperLU
NetCDF
Application Software
Chemistry & BioChemistry
Gaussian98, Gaussian03
Dalton
Molden
Materials Studio
GAMESS US
Crystal03
NAMD
CNSSolve
BioInformatics
Mr Bayes
IM
Blast
ClustalW
Hmmer
Emboss
Phylip
Paup
Beast
Modeller
Paml
TCoffee
Staden
Glimmer
RepeatMasker
Fasta
Engineering
Fluent & Gambit
OpenFOAM
Mathematics & Computing
Matlab - Distributed Computing
Octave
Gauss
R
Sun Java SDK
Simics
Hydra User's Guide