System Software

• Red Hat Enterprise Linux 3 - operating system.

• Torque - queuing system and scheduler.

Compilers and Parallel Computing Libraries

• Portland Group Cluster Development Kit - including compilers, a debugger (pgdbg) and a profiler pgprof.

• Intel Compiler Suite - including C, C++, F77 and F95 compilers.

• MPICH-GM - library for MPI message-passing parallel programming over Myrinet.

• MPICH - library for MPI message-passing parallel programming over ethernet.

Libraries

• Intel MKL - Intel's Math Kernel Library

• BLAS, LAPACK and ScaLAPACK

• ARPACK

• FFTW

• SPRNG

• SuperLU

• NetCDF

Application Software

• Chemistry & BioChemistry

• Gaussian98, Gaussian03

• Dalton

• Molden

• Materials Studio

• GAMESS US

• Crystal03

• NAMD

• CNSSolve

• BioInformatics

• Mr Bayes

• IM

• Blast

• ClustalW

• Hmmer

• Emboss

• Phylip

• Paup

• Beast

• Modeller

• Paml

• TCoffee

• Staden

• Glimmer

• RepeatMasker

• Fasta

• Engineering

• Fluent & Gambit

• OpenFOAM

• Mathematics & Computing

• Matlab - Distributed Computing

• Octave

• Gauss

• R

• Sun Java SDK

• Simics

Hydra User's Guide